Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> art-nextgen-simulation-tools
[  etiona  ] [  nabia  ] [  aramo  ]

Package: art-nextgen-simulation-tools (20160605+dfsg-4build2)

simulation tools to generate synthetic next-generation sequencing reads

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.

Other Packages Related to art-nextgen-simulation-tools

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgsl27 (>= 2.7.1)
    GNU Scientific Library (GSL) -- library package
  • dep: libstdc++6 (>= 5.2) [armhf]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 9) [not armhf]

Download art-nextgen-simulation-tools

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,710.0 kB9004 kB [list of files]
arm64 1,728.5 kB8948 kB [list of files]
armhf 1,764.2 kB8949 kB [list of files]
ppc64el 1,730.3 kB9160 kB [list of files]