[ nabia ]
[ aramo ]
[ Source: cyvcf2 ]
Package: python3-cyvcf2 (0.30.14-1build1)
Links for python3-cyvcf2
Trisquel Resources:
Download Source Package cyvcf2:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
- Liubov Chuprikova
- Nilesh Patra
External Resources:
- Homepage [github.com]
Similar packages:
VCF parser based on htslib (Python 3)
This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.
cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.
This package installs the library for Python 3.
Other Packages Related to python3-cyvcf2
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.7) [armhf]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11)
- dep: python3 (>= 3.10~)
-
- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
-
- dep: python3-coloredlogs
- colored terminal output for Python 3's logging module
-
- dep: python3-numpy (>= 1:1.20.0)
- Fast array facility to the Python 3 language
-
- dep: python3-numpy-abi9
- virtual package provided by python3-numpy
Download python3-cyvcf2
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 817.0 kB | 4733 kB | [list of files] |
| arm64 | 806.8 kB | 4671 kB | [list of files] |
| armhf | 794.9 kB | 4455 kB | [list of files] |
| ppc64el | 874.8 kB | 5036 kB | [list of files] |