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[ Source: libtfbs-perl  ]

Package: libtfbs-perl (0.7.1+ds-2build1)

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libtfbs-perl

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Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Steffen Moeller
  • Charles Plessy
  • Andreas Tille

External Resources:

Similar packages:

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Other Packages Related to libtfbs-perl

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  • dep: libc6 (>= 2.34)
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  • dep: libwww-perl
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  • dep: pdl (>= 1:2.072-1build1)
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  • dep: pdlapi-20
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  • dep: perl
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  • dep: perlapi-5.34.0
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Download libtfbs-perl

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 233.8 kB995 kB [list of files]
arm64 234.1 kB994 kB [list of files]
armhf 232.8 kB986 kB [list of files]
ppc64el 234.4 kB1102 kB [list of files]