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Package: libvcflib1 (1.0.3+dfsg-1)

C++ library for parsing and manipulating VCF files

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: 

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

Other Packages Related to libvcflib1

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [not armhf]
    library for indexing and sequence extraction from FASTA files (lib)
    dep: libfastahack0 (>= 1.0.0+dfsg) [armhf]
  • dep: libgcc-s1 (>= 3.3.1) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: libtabixpp0 (>= 1.0.0)
    C++ wrapper to tabix indexer

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amd64 165.0 kB414 kB [list of files]
arm64 151.8 kB361 kB [list of files]
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ppc64el 174.3 kB469 kB [list of files]