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Package: libmems1 (1.6.0+4725-9build1)

library to support DNA string matching and comparative genomics

libMems is a freely available software development library to support DNA string matching and comparative genomics. Among other things, libMems implements an algorithm to perform approximate multi-MUM and multi-MEM identification. The algorithm uses spaced seed patterns in conjunction with a seed-and-extend style hashing method to identify matches. The method is efficient, requiring a maximum of only 16 bytes per base of the largest input sequence, and this data can be stored externally (i.e. on disk) to further reduce memory requirements.

This package contains the dynamic library.

Other Packages Related to libmems1

  • depends
  • recommends
  • suggests
  • dep: libboost-filesystem1.74.0 (>= 1.74.0)
    filesystem operations (portable paths, iteration over directories, etc) in C++
  • dep: libboost-iostreams1.74.0 (>= 1.74.0)
    Boost.Iostreams Library
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]
    GCC support library
    dep: libgcc-s1 (>= 3.4) [amd64]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgenome0 (>= 1.3.11+svn20110227.4616)
    toolkit for developing bioinformatic related software
  • dep: libmuscle1 (>= 3.7+4565)
    multiple alignment library for protein sequences
  • dep: libstdc++6 (>= 5.2) [armhf]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 9) [not armhf]

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 655.0 kB2021 kB [list of files]
arm64 611.0 kB1787 kB [list of files]
armhf 545.2 kB1246 kB [list of files]
ppc64el 788.9 kB2328 kB [list of files]