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[ Source: libbio-db-gff-perl ]
Package: libbio-db-gff-perl (1.7.4-1)
Links for libbio-db-gff-perl
Trisquel Resources:
Download Source Package libbio-db-gff-perl:
- [libbio-db-gff-perl_1.7.4-1.dsc]
- [libbio-db-gff-perl_1.7.4.orig.tar.gz]
- [libbio-db-gff-perl_1.7.4-1.debian.tar.xz]
Maintainer:
Original Maintainer:
- Michael R. Crusoe
External Resources:
- Homepage [metacpan.org]
Similar packages:
Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators.
The following operations are supported by this module:
- retrieving a segment of sequence based on the ID of a landmark
- retrieving the DNA from that segment
- finding all annotations that overlap with the segment
- finding all annotations that are completely contained within thesegment
- retrieving all annotations of a particular type, either within asegment, or globally
- conversion from absolute to relative coordinates and back again,using any arbitrary landmark for the relative coordinates
- using a sequence segment to create new segments based on relativeoffsets
Other Packages Related to libbio-db-gff-perl
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- dep: libapache-dbi-perl
- interface connecting Apache server to database via perl's DBI
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- dep: libbio-db-biofetch-perl
- Database object interface to BioFetch retrieval
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- dep: libbio-perl-perl
- BioPerl core perl modules
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- dep: libcgi-pm-perl
- module for Common Gateway Interface applications
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
Download libbio-db-gff-perl
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 266.5 kB | 854 kB | [list of files] |