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Package: r-cran-spp (1.16.0-2)

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data 

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

Other Packages Related to r-cran-spp

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  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [not armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-4.0
    virtual package provided by r-base-core
  • dep: r-base-core (>= 4.0.2-1build1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-cran-bh (>= 1.66)
    (Virtual) GNU R package to provide BH
  • dep: r-cran-catools
    GNU R package providing various utility functions
  • dep: r-cran-rcpp
    GNU R package for Seamless R and C++ Integration
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download r-cran-spp

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 315.4 kB456 kB [list of files]
arm64 310.0 kB424 kB [list of files]
armhf 309.8 kB391 kB [list of files]
ppc64el 321.0 kB496 kB [list of files]