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Package: r-bioc-variantannotation (1.40.0-1)

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

Other Packages Related to r-bioc-variantannotation

  • depends
  • recommends
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  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libcurl4 (>= 7.18.0)
    easy-to-use client-side URL transfer library (OpenSSL flavour)
  • dep: r-api-4.0
    virtual package provided by r-base-core
  • dep: r-api-bioc-3.14
    virtual package provided by r-bioc-biocgenerics
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-annotationdbi (>= 1.27.9)
    GNU R Annotation Database Interface for BioConductor
  • dep: r-bioc-biobase
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics (>= 0.37.0)
    generic functions for Bioconductor
  • dep: r-bioc-biostrings (>= 2.57.2)
    GNU R string objects representing biological sequences
  • dep: r-bioc-bsgenome (>= 1.47.3)
    BioConductor infrastructure for Biostrings-based genome data packages
  • dep: r-bioc-genomeinfodb (>= 1.15.2)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicfeatures (>= 1.31.3)
    GNU R tools for making and manipulating transcript centric annotations
  • dep: r-bioc-genomicranges (>= 1.41.5)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.23.9)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-matrixgenerics
    S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
  • dep: r-bioc-rhtslib
    HTSlib high-throughput sequencing library as GNU R package
  • dep: r-bioc-rsamtools (>= 1.99.0)
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-rtracklayer (>= 1.39.7)
    GNU R interface to genome browsers and their annotation tracks
  • dep: r-bioc-s4vectors (>= 0.27.12)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-summarizedexperiment (>= 1.19.5)
    BioConductor assay container
  • dep: r-bioc-xvector (>= 0.29.2)
    BioConductor representation and manpulation of external sequences
  • dep: r-bioc-zlibbioc
    (Virtual) zlibbioc Bioconductor package
  • dep: r-cran-dbi
    GNU R package providing a generic database interface

Download r-bioc-variantannotation

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 3,430.7 kB4828 kB [list of files]
arm64 3,429.9 kB4796 kB [list of files]
armhf 3,403.7 kB4615 kB [list of files]
ppc64el 3,500.2 kB5120 kB [list of files]