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Package: r-bioc-rtracklayer (1.54.0-1)

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Other Packages Related to r-bioc-rtracklayer

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: r-api-4.0
    virtual package provided by r-base-core
  • dep: r-api-bioc-3.14
    virtual package provided by r-bioc-biocgenerics
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biocgenerics (>= 0.35.3)
    generic functions for Bioconductor
  • dep: r-bioc-biocio
    standard input and output for Bioconductor packages
  • dep: r-bioc-biostrings (>= 2.47.6)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.15.2)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicalignments (>= 1.15.6)
    BioConductor representation and manipulation of short genomic alignments
  • dep: r-bioc-genomicranges (>= 1.37.2)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.13.13)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rsamtools (>= 1.31.2)
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-s4vectors (>= 0.23.18)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-xvector (>= 0.19.7)
    BioConductor representation and manpulation of external sequences
  • dep: r-bioc-zlibbioc
    (Virtual) zlibbioc Bioconductor package
  • dep: r-cran-rcurl (>= 1.4-2)
    GNU R General network (HTTP/FTP/...) client interface
  • dep: r-cran-restfulr (>= 0.0.13)
    GNU R interface to RESTful web wervices
  • dep: r-cran-xml (>= 1.98-0)
    GNU R package for XML parsing and generation
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

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Architecture Package Size Installed Size Files
amd64 5,032.3 kB6660 kB [list of files]
arm64 5,030.0 kB6665 kB [list of files]
armhf 5,003.1 kB6473 kB [list of files]
ppc64el 5,070.7 kB6900 kB [list of files]