Package: edlib-aligner (1.2.7-3build1)

Links for edlib-aligner

Trisquel Resources:

Download Source Package libedlib:

Maintainer:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Andreas Tille

External Resources:

Homepage [github.com]

Similar packages:

edlib sequence alignment tool using edit distance

Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.

Features of libedlib

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

Other Packages Related to edlib-aligner

depends

recommends

suggests

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libedlib1 (= 1.2.7-3build1)

library for sequence alignment using edit distance
dep: libgcc-s1 (>= 3.0) [not armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3

Download edlib-aligner

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	23.7 kB	70 kB	[list of files]
arm64	23.2 kB	62 kB	[list of files]
armhf	19.8 kB	49 kB	[list of files]
ppc64el	27.1 kB	86 kB	[list of files]

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