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[ Source: discosnp ]
Package: discosnp (1:2.6.2-1)
Links for discosnp
Trisquel Resources:
Download Source Package discosnp:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Olivier Sallou
- Andreas Tille
External Resources:
- Homepage [colibread.inria.fr]
Similar packages:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
Other Packages Related to discosnp
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- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2) [amd64]
- dynamic library of the Genome Analysis Toolbox
- dep: libgatbcore3 (>= 1.4.2+dfsg) [not amd64]
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
Download discosnp
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 1,414.6 kB | 2617 kB | [list of files] |
| arm64 | 1,408.8 kB | 2569 kB | [list of files] |
| ppc64el | 1,444.1 kB | 2925 kB | [list of files] |