[ aramo ]
[ Source: cat-bat ]
Package: cat-bat (5.2.3-1)
Links for cat-bat
Trisquel Resources:
Download Source Package cat-bat:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Nilesh Patra
External Resources:
- Homepage [github.com]
Similar packages:
taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.
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Download cat-bat
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 27.4 kB | 178 kB | [list of files] |
| arm64 | 27.4 kB | 178 kB | [list of files] |
| ppc64el | 27.4 kB | 178 kB | [list of files] |