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Package: bioawk (1.0-4)

extension of awk for biological sequence analysis

Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.

Other Packages Related to bioawk

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29) [not arm64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.34) [arm64]
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Download bioawk

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 53.8 kB155 kB [list of files]
arm64 57.1 kB146 kB [list of files]
armhf 48.6 kB114 kB [list of files]
ppc64el 67.4 kB274 kB [list of files]