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Package: bio-eagle (2.4.1-3build1)

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bio-eagle

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Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Other Packages Related to bio-eagle

  • depends
  • recommends
  • suggests
  • rec: med-config (>= 2.1)
    Debian Med general config package

Download bio-eagle

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 217.2 kB630 kB [list of files]