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Package: bedtools (2.30.0+dfsg-2ubuntu0.1)

suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

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  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
    dep: libgcc-s1 (>= 4.2) [arm64, ppc64el]
  • dep: liblzma5 (>= 5.1.1alpha+20120614)
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  • dep: libstdc++6 (>= 11)
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  • dep: zlib1g (>= 1:1.1.4)
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Download bedtools

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 549.5 kB1512 kB [list of files]
arm64 519.3 kB1336 kB [list of files]
armhf 628.2 kB1275 kB [list of files]
ppc64el 655.7 kB1944 kB [list of files]